Datasets

The Medicinal Plants Consortium provides reference datasets for use by the community. At present these are transcript assemblies built from RNA-Seq data generated by the Consortium members.

Transcript assemblies were created at the National Center for Genome Resources (NCGR) using a computationally intensive methodology involving the ABySS short read assembler, components of SOAPdenovo (specifically GapCloser), and the Mira EST assembler. Contigs and predicted protein products from these builds are available below.

Reference Datasets

Species Description Sequences [FASTA]
Acacia aulacocarpa Build medp_acaau-20110120 contigs | predicted products
Calophyllum antillanum Build medp_calan-20110119 contigs | predicted products
Camptotheca acuminata Build camptotheca_acuminata-20101112 contigs | predicted products
Cephalotaxus harringtonia Build medp_cepha-20110617 contigs | predicted products
Cinchona pubescens Build medp_cinpu-20110618 contigs | predicted products
Colchicum autumnale Build colchicum_autumnale-20101112 contigs | predicted products
Coleus forskohlii Build medp_colfo-20110601 contigs | predicted products
Datura ceratocaula Build datura_ceratocaula-20101112 contigs | predicted products
Datura innoxia Build datura_innoxia-20101112 contigs | predicted products
Datura metel Build datura_me9-20101112 contigs | predicted products
Datura stramonium Build datura_stramonium-20100406 contigs | predicted products
Datura stramonium Build datura_stramonium-20101112 contigs | predicted products
Datura wrightii Build datura_wrightii-20101112 contigs | predicted products
Digitalis lanata Build digitalis_lanata-20100406 contigs | predicted products
Digitalis lanata Build digitalis_lanata-20101112 contigs | predicted products
Huperzia lucidula Build huperzia_lucidula-20100721 contigs | predicted products
Huperzia lucidula Build huperzia_lucidula-20101112 contigs | predicted products
Huperzia squarrosa Build huperzia_squarrosa-20100406 contigs | predicted products
Huperzia squarrosa Build huperzia_squarrosa-20101112 contigs | predicted products
Hyoscyamus niger Build hyoscyamus_niger-20101112 contigs | predicted products
Larrea tridentata Build larrea_tridentata-20100406 contigs | predicted products
Larrea tridentata Build larrea_tridentata-20101112 contigs | predicted products
Linum flavum Build linum_flavum-20100406 contigs | predicted products
Linum flavum Build linum_flavum-20101112 contigs | predicted products
Linum usitatissimum Build linum_usitatissimum-20100629 contigs | predicted products
Linum usitatissimum Build linum_usitatissimum-20101112 contigs | predicted products
Narcissus spp. Build narcissus_9-20101112 contigs | predicted products
Papaver somniferum Build papaver_somniferum-20100406 contigs | predicted products
Papaver somniferum Build papaver_somniferum-20101112 contigs | predicted products
Pilocarpus pennatifolius Build medp_pilpe-20110620 contigs | predicted products
Podophyllum hexandrum Build podophyllum_hexandrum-20100406 contigs | predicted products
Podophyllum hexandrum Build podophyllum_hexandrum-20101112 contigs | predicted products
Podophyllum peltatum Build podophyllum_peltatum-20100721 contigs | predicted products
Podophyllum peltatum Build podophyllum_peltatum-20101112 contigs | predicted products
Taxus x media Build medp_taxme-20111201 contigs | predicted products
Taxus x media Build taxus_x_media-20100406 contigs | predicted products
Taxus x media Build taxus_x_media-20101112 contigs | predicted products
Tripterygium regelii Build medp_trire-20110120 contigs | predicted products